The MSA Viewer is a modular BioJS component for interactive visualization of multiple sequence alignments in the browser. It supports importing sequences from various formats like FASTA and Clustal, offers customizable color schemes, and allows features like filtering, sorting, and exporting alignments. This tool is designed for bioinformaticians and researchers working with sequence data who need an interactive and customizable way to analyze and visualize multiple sequence alignments.
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Support the dependencies of jupyterlab-contrib/msa
Extended backbone view with support for child views
Only Backbone.Model and collection
Backbone view with JBone injected
BioJS event system
Biological data models
A sequence logo visualizer
JavaScript Canvas to Blob is a function to convert canvas elements into Blob objects (working for npm)
A Filesaver for the browser
A super fast DOM helper lib
Screenshots with JavaScript
Library for DOM manipulation
Convenience methods to save key strokes
Linear scale function.
A simple and lightweight lib to get cross-browser mouse events
Color schemes for residues
Convience tools to work with seqs
small xhr abstraction
babel module loader for webpack
Parses newick strings into JSON and JSON into newick
BDD/TDD assertion library for node.js and the browser. Test framework agnostic.
Encodings that map abstract data to visual representation.
Minify css with clean-css.
Gzip plugin for gulp.
Rename files
simple, flexible, fun test framework
A collection of adapters to combine the MSA and Tree component
Run shell commands in simultaneously
JavaScript test spies, stubs and mocks.
Renders snippets on demand
Webpack loader to strip arbitrary functions out of your production code.
A tiny wrapper around Node.js streams.Transform (Streams2/3) to avoid explicit subclassing noise
TnT tree display
Packs ECMAScript/CommonJs/AMD modules for the browser. Allows you to split your codebase into multiple bundles, which can be loaded on demand. Supports loaders to preprocess files, i.e. json, jsx, es7
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