cytoscape/cytoscape.js-cxtmenu

babel module loader for webpack

A Babel preset for each environment.

BDD/TDD assertion library for node.js and the browser. Test framework agnostic.

Run scripts that set and use environment variables across platforms

Publish to a gh-pages branch on GitHub (or any other branch on any other remote)

simple, flexible, fun test framework

A deep deletion module for node (like `rm -rf`)

Packs ECMAScript/CommonJs/AMD modules for the browser. Allows you to split your codebase into multiple bundles, which can be loaded on demand. Supports loaders to preprocess files, i.e. json, jsx, es7, css, less, ... and your custom stuff.

Serves a webpack app. Updates the browser on changes.

Mathematical expressions can be understood and represented as a tree con-sisting of functions (non-leaf nodes) and their arguments (child nodes of function nodes). Such expression trees are an important concept to store and process mathematical expressions as well as the most frequently used visual-ization of the structure of mathematical expressions. Typically, researchers visualize expression trees using general purpose tools that are not optimized for mathematics. This approach is laborious, redundant if mathematical ex-pressions are available in a structured markup, such as MathML, and error-prone, since the visualization represents a researcher’s notion of what the markup of an expression should be, but not necessarily what the actual markup is. In this paper, we present VET – a tool to automatically visualize mathematical expression trees from parallel MathML. Additionally, we pre-sent a demo application to convert LaTeX input to parallel MathML, which is then visualized using VET. By visualizing the actual markup of mathematical expressions, VET enables content providers to quickly spot problems in the content MathML markup that do not affect the presentation of the expres-sion. Identifying such discrepancies previously required reading the verbose and complex parallel MathML markup. VET also allows to visualize similar and identical elements of two expressions using arbitrary similarity measures. Visualizing expression similarity shall support developers in designing re-trieval approaches and enable improved interaction concepts for users of mathematical information retrieval systems. The similarity visualization al-lows designers and users of such systems to inspect the reasoning of a simi-larity measure, rather than exclusively being provided with a scalar similarity score as is the case for most current retrieval systems.

A Cytoscape Widget for Common Lisp Jupyter

VMEdit is a visual content MathML editor. In the standard workflow parallel markup is generated from LaTeX input, which we visualize in expression tree form. Then, the user alters the tree structure via drag and drop and links symbols to content dictionary entries. In addition to the standard OpenMath content dictionaries, Wikidata items can be used as content symbols.

Annotations for cytoscape graph.

Dynamic and static visualizations of systems biology models written in SBML, BNGL, and PySB

A DeepaMehta 5 topicmap renderer as a composable GUI component

A DMX 5 topicmap renderer as a reusable GUI component